PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn385891

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Nin-like

Protein Properties

Length: 471aa MW: 53201.1 Da PI: 4.974

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn385891	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.8	3.4e-26	295	344	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +s e +s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl Achn385891 295 KALSREIISQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSL 344 78999******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.450.40	3.4E-32	84	180	No hit	No description
Pfam	PF11523	7.1E-24	103	175	IPR021602	Protein of unknown function DUF3223
PROSITE profile	PS51519	18.349	275	365	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-21	297	344	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MAEAAATEAP ETAQDMELEN QNTAAEESTG DAAVNGGEGE ENSKRAREEE AEEESGGEKK 60 QKIEKSAEEE RFEKLDGGEE SDRVGLGPKS FGSSVEMFDY FYKLLHYWPP NLNVNKYEHM 120 MLLDLLKKGH LEPEKKIGEG AAAFQVRYHP QWKSRCFFII RTDESVDDFS FRKCVDHILP 180 LPENMQIKSD VNKALGGGGR GHGGRGGGGG RGGGHGRGRG GRGRREDFLF GNGNDYGVWN 240 HEMGSHATGF EPQNQPFLLC GNEEEVTEEY VGERKAQRKA QRNREEKISN NSCSKALSRE 300 IISQYFYMPI TQAAKELNVG LTLLKKRCRE LGIRRWPHRK LMSLQTLIKN VQEMDNEEGD 360 GAEGKLKEAL EILEQERKLM EEVPDLELED KTKRLRQACF KANYKKRKLM GTTKTIIGQA 420 DSYPYSSTTN RDFYKDDTAN YGIWDDDEDE EQVMKSLLSD DGFSSPDVWF *

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MAEAAATEAP ETAQDMELEN QNTAAEESTG DAAVNGGEGE ENSKRAREEE AEEESGGEKK  60
QKIEKSAEEE RFEKLDGGEE SDRVGLGPKS FGSSVEMFDY FYKLLHYWPP NLNVNKYEHM  120
MLLDLLKKGH LEPEKKIGEG AAAFQVRYHP QWKSRCFFII RTDESVDDFS FRKCVDHILP  180
LPENMQIKSD VNKALGGGGR GHGGRGGGGG RGGGHGRGRG GRGRREDFLF GNGNDYGVWN  240
HEMGSHATGF EPQNQPFLLC GNEEEVTEEY VGERKAQRKA QRNREEKISN NSCSKALSRE  300
IISQYFYMPI TQAAKELNVG LTLLKKRCRE LGIRRWPHRK LMSLQTLIKN VQEMDNEEGD  360
GAEGKLKEAL EILEQERKLM EEVPDLELED KTKRLRQACF KANYKKRKLM GTTKTIIGQA  420
DSYPYSSTTN RDFYKDDTAN YGIWDDDEDE EQVMKSLLSD DGFSSPDVWF *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	209	GGRGGGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	7e-57	RWP-RK domain-containing protein